Brent M. Znosko: search on Z-Library

The world's largest scientific articles store. 70,000,000+ articles for free.

Don't use scam websites

1

Surprising Sequence Effects on GU Closure of Symmetric 2 × 2 Nucleotide RNA Internal Loops

Berger, Kyle D., Kennedy, Scott D., Schroeder, Susan J., Znosko, Brent M., Sun, Hongying, Mathews, David H., Turner, Douglas H.

Journal:

Year:

2018

Language:

english

File:

PDF, 3.05 MB

english, 2018

2

Solution Structure of the HIV-1 Exon Splicing Silencer 3

Jeffrey D. Levengood, Carrie Rollins, Clay H.J. Mishler, Charles A. Johnson, Grace Miner, Prashant Rajan, Brent M. Znosko, Blanton S. Tolbert

Journal:

Journal of Molecular Biology

Year:

2012

Language:

english

File:

PDF, 2.20 MB

english, 2012

3

GCCU) 2†,‡

Znosko, Brent M., Burkard, Mark E., Schroeder, Susan J., Krugh, Thomas R., Turner, Douglas H.

Journal:

Year:

2002

File:

PDF, 306 KB

2002

4

Thermodynamic Characterization of RNA 2 × 3 Nucleotide Internal Loops

Hausmann, Nina Z., Znosko, Brent M.

Journal:

Year:

2012

Language:

english

File:

PDF, 785 KB

english, 2012

5

Structural Features and Thermodynamics of the J4/5 Loop from the Candida albicans and Candida dubliniensis Group I Introns †,‡

Znosko, Brent M., Kennedy, Scott D., Wille, Pamela C., Krugh, Thomas R., Turner, Douglas H.

Journal:

Year:

2004

Language:

english

File:

PDF, 611 KB

english, 2004

6

Reply to “Comment on 'Computational Model for Predicting Experimental RNA and DNA Nearest-Neighbor Free Energy Rankings'”

Johnson, Charles A., Bloomingdale, Richard J., Ponnusamy, Vikram E., Tillinghast, Conor A., Znosko, Brent M., Lewis, Michael

Journal:

Journal of Physical Chemistry B

Year:

2012

Language:

english

File:

PDF, 131 KB

english, 2012

7

Thermodynamic Characterization of Single Mismatches Found in Naturally Occurring RNA †

Davis, Amber R., Znosko, Brent M.

Journal:

Year:

2007

Language:

english

File:

PDF, 74 KB

english, 2007

8

Computational Model for Predicting Experimental RNA and DNA Nearest-Neighbor Free Energy Rankings

Johnson, Charles A., Bloomingdale, Richard J., Ponnusamy, Vikram E., Tillinghast, Conor A., Znosko, Brent M., Lewis, Michael

Journal:

Journal of Physical Chemistry B

Year:

2011

Language:

english

File:

PDF, 1016 KB

english, 2011

9

Nearest Neighbor Parameters for Inosine·Uridine Pairs in RNA Duplexes

Wright, Daniel J., Rice, Jamie L., Yanker, Dawn M., Znosko, Brent M.

Journal:

Year:

2007

Language:

english

File:

PDF, 189 KB

english, 2007

10

Solution Structure of an RNA Internal Loop with Three Consecutive Sheared GA Pairs †,‡

Chen, Gang, Znosko, Brent M., Kennedy, Scott D., Krugh, Thomas R., Turner, Douglas H.

Journal:

Year:

2005

Language:

english

File:

PDF, 550 KB

english, 2005

11

Thermodynamic Characterization of Naturally Occurring RNA Single Mismatches with G-U Nearest Neighbors †

Davis, Amber R., Znosko, Brent M.

Journal:

Year:

2008

Language:

english

File:

PDF, 86 KB

english, 2008

12

GCCU) 2†,‡

Znosko, Brent M., Burkard, Mark E., Krugh, Thomas R., Turner, Douglas H.

Journal:

Year:

2002

Language:

english

File:

PDF, 238 KB

english, 2002

13

Thermodynamic Characterization of the Complete Set of Sequence Symmetric Tandem Mismatches in RNA and an Improved Model for Predicting the Free Energy Contribution of Sequence Asymmetric Tandem Mismatches †

Christiansen, Martha E., Znosko, Brent M.

Journal:

Year:

2008

Language:

english

File:

PDF, 105 KB

english, 2008

14

Positional and Neighboring Base Pair Effects on the Thermodynamic Stability of RNA Single Mismatches

Davis, Amber R., Znosko, Brent M.

Journal:

Year:

2010

Language:

english

File:

PDF, 1.88 MB

english, 2010

15

Thermodynamic Characterization of RNA Triloops

Thulasi, Praneetha, Pandya, Lopa K., Znosko, Brent M.

Journal:

Year:

2010

Language:

english

File:

PDF, 676 KB

english, 2010

16

Thermodynamic Parameters for an Expanded Nearest-Neighbor Model for the Formation of RNA Duplexes with Single Nucleotide Bulges †

Znosko, Brent M., Silvestri, Sara B., Volkman, Heather, Boswell, Bob, Serra, Martin J.

Journal:

Year:

2002

Language:

english

File:

PDF, 295 KB

english, 2002

17

Effects of Non-Nearest Neighbors on the Thermodynamic Stability of RNA GNRA Hairpin Tetraloops

Vanegas, Pamela L., Horwitz, Teresa S., Znosko, Brent M.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.02 MB

english, 2012

18

Factors Affecting Thermodynamic Stabilities of RNA 3 × 3 Internal Loops †

Chen, Gang, Znosko, Brent M., Jiao, Xiaoqi, Turner, Douglas H.

Journal:

Year:

2004

Language:

english

File:

PDF, 131 KB

english, 2004

19

Thermodynamic Characterization of RNA Duplexes Containing Naturally Occurring 1 × 2 Nucleotide Internal Loops †

Badhwar, Jaya, Karri, Saradasri, Cass, Cody K., Wunderlich, Erica L., Znosko, Brent M.

Journal:

Year:

2007

Language:

english

File:

PDF, 67 KB

english, 2007

20

Improved Model to Predict the Free Energy Contribution of Trinucleotide Bulges to RNA Duplex Stability

Murray, Meghan H., Hard, Jessicah A., Znosko, Brent M.

Journal:

Year:

2014

Language:

english

File:

PDF, 631 KB

english, 2014

21

Effect of Sodium Ions on RNA Duplex Stability

Chen, Zexiang, Znosko, Brent M.

Journal:

Year:

2013

Language:

english

File:

PDF, 431 KB

english, 2013

22

Predicting DNA-intercalator binding: the development of an arene-arene stacking parameter from SAPT analysis of benzene-substituted benzene complexes

Hardebeck, Laura K. E., Johnson, Charles A., Hudson, Graham A., Ren, Yi, Watt, Michelle, Kirkpatrick, Charles C., Znosko, Brent M., Lewis, Michael

Journal:

Journal of Physical Organic Chemistry

Year:

2013

Language:

english

File:

PDF, 345 KB

english, 2013

23

NMR Studies of DNA Single Strands and DNA:RNA Hybrids with and without 1-Propynylation at C5 of Oligopyrimidines ‡,#

Znosko, Brent M., Barnes, Thomas W., Krugh, Thomas R., Turner, Douglas H.

Journal:

Journal of the American Chemical Society

Year:

2003

Language:

english

File:

PDF, 266 KB

english, 2003

24

Effect of intercalator substituent and nucleotide sequence on the stability of DNA- and RNA-naphthalimide complexes

Johnson, Charles A., Hudson, Graham A., Hardebeck, Laura K.E., Jolley, Elizabeth A., Ren, Yi, Lewis, Michael, Znosko, Brent M.

Journal:

Bioorganic & Medicinal Chemistry

Year:

2015

Language:

english

File:

PDF, 658 KB

english, 2015

25

Improved Model for Predicting the Free Energy Contribution of Dinucleotide Bulges to RNA Duplex Stability

Tomcho, Jeremy C., Tillman, Magdalena R., Znosko, Brent M.

Journal:

Year:

2015

Language:

english

File:

PDF, 755 KB

english, 2015

26

A computational model for predicting experimental RNA nearest-neighbor free energy rankings: Inosine·uridine pairs

Jolley, Elizabeth A., Lewis, Michael, Znosko, Brent M.

Journal:

Chemical Physics Letters

Year:

2015

Language:

english

File:

PDF, 492 KB

english, 2015

27

Nearest-neighbor parameters for 7-deaza-adenosine·uridine base pairs in RNA duplexes

Richardson, Katherine E., Znosko, Brent M.

Journal:

Year:

2016

Language:

english

File:

PDF, 501 KB

english, 2016

28

Analysis of secondary structural elements in human microRNA hairpin precursors

Liu, Biao, Childs-Disney, Jessica L., Znosko, Brent M., Wang, Dan, Fallahi, Mohammad, Gallo, Steven M., Disney, Matthew D.

Journal:

BMC Bioinformatics

Year:

2016

Language:

english

File:

PDF, 1.83 MB

english, 2016

29

The loss of a hydrogen bond: Thermodynamic contributions of a non-standard nucleotide

Jolley, Elizabeth A., Znosko, Brent M.

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 599 KB

english, 2016

30

The effects of varying the substituent and DNA sequence on the stability of 4-substituted DNA-naphthalimide complexes

Jolley, Elizabeth A., Hardebeck, Laura K.E., Ren, Yi, Adams, Miranda S., Lewis, Michael, Znosko, Brent M.

Journal:

Biophysical Chemistry

Year:

2018

Language:

english

File:

PDF, 954 KB

english, 2018

31

Stability of RNA duplexes containing inosine·cytosine pairs

Wright, Daniel J, Force, Christopher R, Znosko, Brent M

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 220 KB

english, 2018

32

Identification and Characterization of New RNA Tetraloop Sequence Families

Richardson, Katherine E., Adams, Miranda S., Kirkpatrick, Charles C., Gohara, David W., Znosko, Brent M.

Journal:

Year:

2019

Language:

english

File:

PDF, 3.44 MB

english, 2019

33

Predictions and analyses of RNA nearest neighbor parameters for modified nucleotides

Hopfinger, Melissa C, Kirkpatrick, Charles C, Znosko, Brent M

Journal:

Nucleic Acids Research

Year:

2020

File:

PDF, 1.11 MB

2020

34

RNA CoSSMos 2.0: an improved searchable database of secondary structure motifs in RNA three-dimensional structures

Richardson, Katherine E, Kirkpatrick, Charles C, Znosko, Brent M

Journal:

Year:

2020

File:

PDF, 855 KB

2020